哺乳類名錄 鳥類名錄 兩生類 天蛾類名錄附錄二、臺灣地區野生動物名錄 (哺乳類、兩生類、鳥類、天蛾類)
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| 代號 | 中文名 | 學名 | 英文名 |
| MO1 | 食蟲目 | INSECTIVORA | |
| MF1 | 鼴鼠科 | Talpidae | |
| M0001 | 臺灣鼴鼠 | Mogera insularis | Formosan blind mole |
| MF2 | 尖鼠科 | Soricidae | |
| M0002 | 山階氏鼩鼱 | Anourosorex squamipes yamashinai | Formosan burrowing shrew |
| M0003 | 水鼩 | Chimarrogale himalayica | Asiatic water shrew |
| M0004 | 臺灣灰鼩鼱 | Crocidura attenuata tanakae | Tanaka's gray shrew |
| M0005 | 臺灣小麝鼩 | Crocidura horsfieldi kurodai | Kuroda's shrew |
| M0006 | 蘭嶼小麝鼩 | Crocidura horsfieldi tadae | Tada's shrew |
| M0007 | 臺灣白足鼩鼱 | Crocidura russula hosletti | Hosletti's shrew |
| M0008 | 臺灣煙尖鼠 | Episoriculus fumidus | Taiwan long-tailed shrew |
| M0009 | 家鼩 | Suncus murinus | House shrew |
| MO2 | 翼手目 | CHIROPTERA | |
| MF3 | 大蝙蝠科 | Pteropidae | |
| M0010 | 臺灣狐蝠 | Pteropus dasymatlus formosus | Formosan flying fox |
| MF4 | 蹄鼻蝠科 | Rhinolophidae | |
| M0011 | 臺灣大蹄鼻蝠 | Rhinolophus luctus formosan | Formosan greater horseshoe bat |
| M0012 | 臺灣小蹄鼻蝠 | Rhinolophus monoceros | Formosan lesser horseshoe bat |
| MF5 | 葉鼻蝠科 | Hipposideridae | |
| M0013 | 臺灣葉鼻蝠 | Hipposideros armiger terasensis | Formosan leaf-nosed bat |
| M0014 | 臺灣無尾葉鼻蝠 | Coelops frithi formosanus | Formosan tailles leaf-nosed bat |
| MF6 | 蝙蝠科 | Vespertilionidae | |
| M0015 | 渡賴氏鼠耳蝠 | Myotis formosus watasei | Watase's orange whiskered bat |
| M0016 | 寬吻鼠耳蝠 | Myotis latirostris | Broad-muzzled whiskered bat |
| M0017 | 臺灣鼠耳蝠 | Myotis taiwanensis | Formosan whiskered bat |
| M0018 | 堀川氏棕蝠 | Eptesicus horikawai kishida | Horikawa's bat |
| M0019 | 家蝠 | Pipistrellus abramus | Japanese pipistrellus |
| M0020 | 褶翅蝙蝠 | Miniopterus schriebersi | Bent-winged bat |
| M0021 | 高頭蝙蝠 | Scotophilus temminckii consobrinus | Hairnan lesser-hellow bat |
| M0022 | 管鼻蝠 | Murina puta kishida | Formosan tube-nosed bat |
| M0023 | 大管鼻蝠 | Harpiocephalus harpia | Hairy-winged bat |
| M0024 | 夜蝠 | Nyctalus noctula | Noctule bat |
| M0025 | 東方食蟲蝠 | Vespertilo orientalis | |
| MO3 | 靈長目 | PRIMATES | |
| MF7 | 獼猴科 | Cercopithecidae | |
| M0026 | 臺灣獼猴 | Macaca cyclopis | Formosan rocky monkey |
| MO4 | 兔形目 | LAGOMORPHA | |
| MF8 | 兔科 | Leporidae | |
| M0027 | 臺灣野兔 | Lepus sinensis formosanus | Formosan hare |
| MO5 | 囓齒目 | RODENTIA | |
| MF9 | 松鼠科 | Sciuridae | |
| M0028 | 赤腹松鼠 | Callosciurus erythraeus | Red-bellied tree squirrel |
| M0029 | 臺灣長吻松鼠 | Dremomys pernyi owstoni | Owslon's long-nosed tree squirrel |
| M0030 | 臺灣條紋松鼠 | Tamiops swinhoe formosanus | Formosan stripped squirrel |
| M0031 | 小鼯鼠 | Belomys pearsoni kaleensis | Formosan hairy-footed flying squirrel |
| M0032 | 大赤鼯鼠 | Petaurista petaurista grandis | Formosan red-giant flying squirrel |
| M0033 | 白面鼯鼠 | Petaurista alborufus lena | White-faced flying squirrel |
| MF10 | 鼠科 | Muridae | |
| M0034 | 家鼠 | Rattus rattus | Black rat |
| M0035 | 溝鼠 | Rattus norvegeicus | Brown rat |
| M0036 | 高山白腹鼠 | Rattus culturatus | Formosan white-bellied rat |
| M0037 | 刺鼠 | Rattus coxinga niviventer | Spinous country-rat |
| M0038 | 小黃腹鼠 | Rattus losea | Brown country rat |
| M0039 | 赤背條鼠 | Apodemus agrarius | Formosan striped field mouse |
| M0040 | 臺灣森鼠 | Apodemus semotus | Formosan field mouse |
| M0041 | 家鼷鼠 | Mus musculus | House mouse |
| M0042 | 田鼷鼠 | Mus formosanus | Formosan mouse |
| M0043 | 鬼鼠 | Bandicota indica | Taiwan bandicoot rat |
| M0044 | 巢鼠 | Micromys minutus | Harvest mouse |
| MF11 | 倉鼠科 | Cricetidae | |
| M0045 | 臺灣黑腹絨鼠 | Eothenomys melanogaster | Formosan black-bellied vole |
| M0046 | 臺灣高山田鼠 | Microtus kikuchii | Formosan mountain field vole |
| MO6 | 食肉目 | CARNIVORA | |
| MF12 | 熊科 | Ursidae | |
| M0047 | 臺灣黑熊 | Selenarctos thibetanus formosanus | Formosan black bear |
| MF13 | 貂科 | Mustelidae | |
| M0048 | 黃喉貂 | Martes flavigula chrysospila | Formosan yellow-throated marten |
| M0049 | 黃鼠狼 | Mustela sibirica taivana | Formosan weasel |
| M0050 | 鼬獾 | Melogale moschata subaurantiaca | Formosan ferret-badger |
| M0051 | 水獺 | Lutra lutra chinensis | Chinese otter |
| MF14 | 靈貓科 | Viverridae | |
| M0052 | 麝香貓 | Viverricula indica pallida | Chinese lesser civet |
| M0053 | 白鼻心 | Paguma larvata taivana | Gem-faced civet |
| M0054 | 食蟹濛 | Herpestes urva | Crab-eating mongosse |
| MF15 | 貓科 | Felidae | |
| M0055 | 石虎 | Felis bengalensis chinensis | Chinese leopard cat |
| M0056 | 臺灣雲豹 | Neofelis nebulosa brachyurus | Formosan clouded leopard |
| MO7 | 鱗甲目 | PHOLIDOTA | |
| MF16 | 穿山甲科 | Manidae | |
| M0057 | 穿山甲 | Manis pentadactyla pentadactyla | Chinese pangolin |
| MO8 | 偶蹄目 | ARTIODACTYLA | |
| MF17 | 豬科 | Suidae | |
| M0058 | 臺灣野豬 | Sus scrofa taivanus | Formosan wild boar |
| MF18 | 鹿科 | Cervidae | |
| M0059 | 山羌 | Muntiacus reevesi micrurus | Formosan barking deer |
| M0060 | 梅花鹿 | Cervus nippon taiouanus | Formosan sika deer |
| M0061 | 水鹿 | Cervus unicolor swinhoei | Formosan sambar |
| MF19 | 牛科 | Bovidae | |
| M0062 | 臺灣長鬃山羊 | Capricornis crispus swinhoei | Formosan serow |
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